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Defense and stress-responsive element gene transcriptions

Introduction

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Human genes

Consensus sequences

Consensus sequences

Defense and stress-responsive elements (ATTTTCTTCA).[1]

Hypotheses

Hypotheses

Main article: Hypotheses
  1. A1BG has no DREs in either promoter.
  2. A1BG is not transcribed by a DRE.
  3. DRE does not participate in the transcription of A1BG.
Samplings

Samplings

Main article: Model samplings

Samplings

Copying the consensus of the DRE: 5′-ATTTTCTTCA-3′ and putting the sequence in “⌘F” finds no locations for this sequence in any A1BG direction as can be found by the computer programs.

For the Basic programs testing consensus sequence 5′-ATTTTCTTCA-3′ (starting with SuccessablesDRE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for 5′-ATTTTCTTCA-3′, 0.
  2. negative strand, positive direction, looking for 5′-ATTTTCTTCA-3′, 0.
  3. positive strand, negative direction, looking for 5′-ATTTTCTTCA-3′, 0.
  4. positive strand, positive direction, looking for 5′-ATTTTCTTCA-3′, 0.
  5. complement, negative strand, negative direction, looking for 5′-TAAAAGAAGT-3′, 0.
  6. complement, negative strand, positive direction, looking for 5′-TAAAAGAAGT-3′, 0.
  7. complement, positive strand, negative direction, looking for 5′-TAAAAGAAGT-3′, 0.
  8. complement, positive strand, positive direction, looking for 5′-TAAAAGAAGT-3′, 0.
  9. inverse complement, negative strand, negative direction, looking for 5′-TGAAGAAAAT-3′, 0.
  10. inverse complement, negative strand, positive direction, looking for 5′-TGAAGAAAAT-3′, 0.
  11. inverse complement, positive strand, negative direction, looking for 5′-TGAAGAAAAT-3′, 0.
  12. inverse complement, positive strand, positive direction, looking for 5′-TGAAGAAAAT-3′, 0.
  13. inverse negative strand, negative direction, looking for 5′-ACTTCTTTTA-3′, 0.
  14. inverse negative strand, positive direction, looking for 5′-ACTTCTTTTA-3′, 0.
  15. inverse positive strand, negative direction, looking for 5′-ACTTCTTTTA-3′, 0.
  16. inverse positive strand, positive direction, looking for 5′-ACTTCTTTTA-3′, 0.
See also

See also

References

References

  1. ↑ Bhaskar Sharma & Joemar Taganna (12 June 2020). “Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato”. Scientific Reports. 10 (9581). doi:10.1038/s41598-020-66553-1. PMID 32533036 Check |pmid= value (help). Retrieved 27 August 2020.
External links